molecular biology
Homo sapiens
database
Aberrant Splicing Database
EGAD: Expressed Gene Anatomy Database
Ensembl Trace Server: SSAHA Search
HGBASE: Human Genic Bi-Allelic Sequences Database
HGMP Primers Database
HTDB: Human Transcript Database: information related to RNA molecules that have
been sequenced.
HugeIndex: a database with visualization tools for high-density oligonucleotide
array data from normal human tissues
Human Genic Bi-Allelic SEquences (HGBASE)
Human SNP Database
ICRF Probes Database
NHGRI Microarray Project: Query the 15K Set
PEDB
Tooth Development Database
Transcription Factor Binding Site Clusters in the Human Genome
Virgil: Database of rich links.
resources index
Essential WWW-Links in Human Molecular Genetics
online analysis tools
EGAD: Expressed Gene Anatomy Database
Ensembl Trace Server: SSAHA Search
Gene Express
HTDB: Human Transcript Database: information related to RNA molecules that have
been sequenced.
HugeIndex: a database with visualization tools for high-density oligonucleotide
array data from normal human tissues
NHGRI Microarray Project: Query the 15K Set
PromoterInspector
Transcription Factor Binding Site Clusters in the Human Genome
Virgil: Database of rich links.
courses and tutorials
Human Cell Culture Methods
Human DNA Preparations
software
Identifying the 3'-terminal exon in human DNA
primates (except human)
database
Aberrant Splicing Database
online analysis tools
Gene Express
PromoterInspector
mouse
database
Aberrant Splicing Database
FANTOM: a functional annotation of mouse for the RIKEN full-length cDNA clone
HGMP Primers Database
ICRF Probes Database
Keynet: RAT GENE Tree Browsing
online analysis tools
FANTOM: a functional annotation of mouse for the RIKEN full-length cDNA clone
Keynet: RAT GENE Tree Browsing
PromoterInspector
other vertebrates
database
IMpRH
Keynet: RAT GENE Tree Browsing
online analysis tools
Keynet: RAT GENE Tree Browsing
Drosophila melanogaster
database
FlyNets Database
FlyView
Others
Drosophila DNA Microarray Homepage
Nagoshi Drosophila Lab
Caenorhabditis elegans
courses and tutorials
CPC : Comprehensive Protocols Collection
Worm Protocols
Zebrafish
resources index
The Zebrafish
other invertebrates
Others
Laboratoire de Biologie Parasitaire, Protistologie, Helminthologie, MNHN, Paris
Arabidopsis thaliana
database
Arabidopsis Functional Genomics Consortium (AFGC)
FLAGdb/FST a database of mapped flanking insertion sites (FSTs) of Arabidopsis
thaliana T-DNA transformants
PLACE
PPMdb (Plant Plasma Membrane Database)
online analysis tools
FLAGdb/FST a database of mapped flanking insertion sites (FSTs) of Arabidopsis
thaliana T-DNA transformants
forums, meetings
Arabidopsis Functional Genomics Consortium (AFGC)
Others
ISV: Institut des Sciences Vegetales (Institute of Plant Sciences
Nicotina tabacum
database
PLACE
PlantCARE
PPMdb (Plant Plasma Membrane Database)
other plants
database
Angiosperm DNA C-Values Database
CABRI Common Access to Biological Resources and Information
Maize RLFP Probe Catalog
MycorWeb
PLACE
PlantCARE
PPMdb (Plant Plasma Membrane Database)
resources index
WWW Virtual Library:(Botany) Plant-Arrays
online analysis tools
Angiosperm DNA C-Values Database
CABRI Common Access to Biological Resources and Information
Others
biogemma: plant biotechnology research
Chrispeels lab: plant molecular biology
ISV: Institut des Sciences Vegetales (Institute of Plant Sciences
fungi
database
CABRI Common Access to Biological Resources and Information
MycorWeb
online analysis tools
CABRI Common Access to Biological Resources and Information
TRIPLES - a database of TRansposon-Insertion Phenotypes, Localization, and
Expression in Saccharomyces.
Yeast snoRNA Database
yMGV: helping biologists with yeast microarray data mining
resources index
A collection of www-links for The Yeast Two-Hybrid Screen
Molecular Biology>Yeast>Preparation of Yeast DNA, RNA and Protein
Molecular Biology>Yeast>Techniques of Yeast Genetics
Molecular Biology>Yeast>YAC
Molecular Biology>Yeast>Yeast Culture
Molecular Biology>Yeast>Yeast Media and Reagents
Molecular Biology>Yeast>Yeast Transformation
Molecular Biology>Yeast>Yeast Two Hybrid System
online analysis tools
CABRI Common Access to Biological Resources and Information
Yeast Genome Reverse Restricion Mapping
yMGV: helping biologists with yeast microarray data mining
courses and tutorials
Molecular Biology>Yeast>Preparation of Yeast DNA, RNA and Protein
Molecular Biology>Yeast>Techniques of Yeast Genetics
Molecular Biology>Yeast>YAC
Molecular Biology>Yeast>Yeast Culture
Molecular Biology>Yeast>Yeast Media and Reagents
Molecular Biology>Yeast>Yeast Transformation
Molecular Biology>Yeast>Yeast Two Hybrid System
Others
KOVÁC LAB
other eukaryotes
courses and tutorials
Eukaryotic Gene Expression, Problem Sets & Tutorials
Escherichia coli
database
A DNA Structural Atlas of Escherichia coli and other microbial genomes
ECDC, E.coli database collection
RegulonDB
resources index
Molecular Biology>Bacteria>Antibiotics
Molecular Biology>Bacteria>Bacteria Assay
Molecular Biology>Bacteria>Bacteria Culture
Molecular Biology>Bacteria>Culture Media
Molecular Biology>Bacteria>Nucleic Acid Extraction
Protocols on E. coli
The E. coli Index
courses and tutorials
Genetic Protocols
Molecular Biology>Bacteria>Antibiotics
Molecular Biology>Bacteria>Bacteria Assay
Molecular Biology>Bacteria>Bacteria Culture
Molecular Biology>Bacteria>Culture Media
Molecular Biology>Bacteria>Nucleic Acid Extraction
Protocols on E. coli
The E. coli Index
Others
Cytoshop: on-line marketing of E.coli-derived recombinant human cytokines and
growth factors
Bacillus subtilis
resources index
Molecular Biology>Bacteria>Antibiotics
Molecular Biology>Bacteria>Bacteria Assay
Molecular Biology>Bacteria>Bacteria Culture
Molecular Biology>Bacteria>Culture Media
Molecular Biology>Bacteria>Nucleic Acid Extraction
courses and tutorials
Molecular Biology>Bacteria>Antibiotics
Molecular Biology>Bacteria>Bacteria Assay
Molecular Biology>Bacteria>Bacteria Culture
Molecular Biology>Bacteria>Culture Media
Molecular Biology>Bacteria>Nucleic Acid Extraction
Vibrio cholerae
resources index
Molecular Biology>Bacteria>Antibiotics
Molecular Biology>Bacteria>Bacteria Assay
Molecular Biology>Bacteria>Bacteria Culture
Molecular Biology>Bacteria>Culture Media
Molecular Biology>Bacteria>Nucleic Acid Extraction
courses and tutorials
Molecular Biology>Bacteria>Antibiotics
Molecular Biology>Bacteria>Bacteria Assay
Molecular Biology>Bacteria>Bacteria Culture
Molecular Biology>Bacteria>Culture Media
Molecular Biology>Bacteria>Nucleic Acid Extraction
mycobacteria
resources index
Molecular Biology>Bacteria>Antibiotics
Molecular Biology>Bacteria>Bacteria Assay
Molecular Biology>Bacteria>Bacteria Culture
Molecular Biology>Bacteria>Culture Media
Molecular Biology>Bacteria>Nucleic Acid Extraction
courses and tutorials
Molecular Biology>Bacteria>Antibiotics
Molecular Biology>Bacteria>Bacteria Assay
Molecular Biology>Bacteria>Bacteria Culture
Molecular Biology>Bacteria>Culture Media
Molecular Biology>Bacteria>Nucleic Acid Extraction
Others
Génétique moléculaire bactérienne (Pasteur)
other bacteria
database
A DNA Structural Atlas of Escherichia coli and other microbial genomes
CABRI Common Access to Biological Resources and Information
IS database
PROCARYOTIC 16S rRNA SIGNATURE DATABASE
RIDOM: Ribosomal Differentiation of Medical Micro-organisms Database
resources index
Molecular Biology>Bacteria>Antibiotics
Molecular Biology>Bacteria>Bacteria Assay
Molecular Biology>Bacteria>Bacteria Culture
Molecular Biology>Bacteria>Culture Media
Molecular Biology>Bacteria>Nucleic Acid Extraction
online analysis tools
CABRI Common Access to Biological Resources and Information
PROCARYOTIC 16S rRNA SIGNATURE DATABASE
RIDOM: Ribosomal Differentiation of Medical Micro-organisms Database
SSU rRNA Secondary Structure Prediction and Alignment
courses and tutorials
Laboratory Manuals and Strain Kits: Archaea: A Laboratory Manual
Molecular Biology>Bacteria>Antibiotics
Molecular Biology>Bacteria>Bacteria Assay
Molecular Biology>Bacteria>Bacteria Culture
Molecular Biology>Bacteria>Culture Media
Molecular Biology>Bacteria>Nucleic Acid Extraction
software
Identification of characteristic oligonucleotides in the bacterial 16S ribosomal
RNA sequence dataset
Others
Biologie Moléculaire des Streptomyces
Infectio Diagnostic
viruses
database
CABRI Common Access to Biological Resources and Information
VirOligo: a database of virus-specific oligonucleotides
resources index
SCIENCE.ORG:Virology Laboratory
online analysis tools
CABRI Common Access to Biological Resources and Information
VirOligo: a database of virus-specific oligonucleotides
courses and tutorials
SCIENCE.ORG:Virology Laboratory
Others
A screening method to identify new HIV inhibitors
Henry M. Jackson Foundation Retrovirology
PCR detection of respiratory viruses
other prokaryotes
database
IS database
courses and tutorials
Molecular Genetics of Prokaryotes, Problem Sets & Tutorials
Prokaryotic Gene Expression
Others
database
5S ribosomal RNA Homepage
AARS: Aminoacyl-tRNA Synthetase Data Bank
ACTIVITY: Functional DNA/RNA site sequences
AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences
Apoptosis Web site
ArrayExpress Database
ASDB: database of alternatively spliced genes
at John Hopkins
ATCC Vector Diagrams
DEAMBULUM: Nucleic acid sequence databases
DNA & Protein Analysis Toolkit
Documentation on the EMBL Nucleotide Sequence Database
DoPrimer: primer design
DoubleTwist.com: genomic portal, Prophecy Database and Tools Suite, AGAVE
DRC: Database of Ribosomal Crosslinks
Electronic PCR
EPD: Eukaryotic Promoter Database (original)
Eukaryotic Promoter Database (EPD) by Philipp Bucher
ExPASy Molecular Biology Server
FIMM: Functional molecular immunology data (diseases, antigens, peptides and HLA
binding sites
FRONTIERS IN BIOSCIENCE; DATABASES; TRANSCRIPTION FACTORS
FRONTIERS IN BIOSCIENCE; DATABASES; VECTORS
FunSite
Gene Expression databases list
Gene Expression Markup Language (GEML) in XML
Gene Identification and Structure databases list
GeneNest Index
GEO (NCBI gene expression omnibus)
GRESA - COMPEL database
Guide RNA db
Intermolecular Interactions Databases (NAR)
Intermolecular Interactions databases list
IUMB: INTERNATIONAL UNION OF BIOCHEMISTRY AND MOLECULAR BIOLOGY
Keynet
Keynet: MITOCHONDRIAL GENE Tree Browsing
Kidney development and gene expression database
LABORATOIRE de BIOCHIMIE et BIOLOGIE MOLECULAIRE des INSECTES, INSTITUT PASTEUR,
PARIS
Large-Scale Gene Expression and Microarray Links and Resources
Links2Go: Molecular Biological Databases
Links2Go: Mutation Databases
List of Apoptosis Regulators
List of translation initiation factors
M i t B A S E - Pilot
M i t B A S E: a Comprehensive and Integrated Mitochondrial DNA Database
MAGEST
Major Sequence Repositories
MGED: International meetings on Microarray Data Standards, Annotations,
Ontologies and Databases
MINT: a database designed to store functional interactions between biological
molecules (proteins, RNA, DNA).
MitoNuc: a database of nuclear genes coding for mitochondrial proteins.
Molecular Bioinformatics of Gene Regulation
Molecular Biology and Molecular Biology Databases: General Information and
Tutorials
Molecular Biology Databases on the Internet
Molecular Biology>RNA>RNA Labeling
Molecular Probe Data Base (MPDB)
Mutation Databases list
NCBI Electronic PCR
NDB Atlas of Nucleic Acid containing Structure
NDB:
NEB Restriction Endonucleases database
NEB Taq DNA Polymerase
New England Biolabs
Non-canonical Base Pair Database
ODNbase: the antisense Oligo Database
PatSearch
Pseudobase: Information on RNA pseudoknots
Putative Alternative Splicing Database (PALS db)
RDP: Ribosomal Database Project
READ: RIKEN Expression Array Database
ReBASE Information Tool
RFLP databases
RNA Modification Database: Naturally modified nucleosides in RNA
RNA Sequences database list
Biochemistry resources and sites
Bioinformatics DNA Features & Composition Programs Resource site
Bioinformatics Primer Programs Resource site
Bioinformatics Restriction Enzymes Programs Resource site
bioinformatik.de / Databases / Metabolism and Regulation
bioinformatik.de / Microarray Technology
bioinformatik.de / PCR / Primer Design
bioinformatik.de: Regulatory Regions
Biology and Genetics resources (links2go)
Biology links for molecular and cell biology.
BioNetbook: primer software
BNI: Biomolecular Networks Initiative
Cell and Molecular Biology WWW sites (Fordham)
Cell Biology>Cytogenetics>CGH (Comparative Genomic Hybridization)
Cell Biology>Cytogenetics>ISH (In Situ Hybridization)
classified links with icons.
CMBO: Cell & Molecular Biology Online
CSUBIOWEB : genetics/molecular biology
DEAMBULUM: Nucleic acid sequence databases
DNA & Protein Analysis Toolkit
DNA Chip
DNA Microarray (Genome Chip)
DNA Microarrays
DoubleTwist.com: genomic portal, Prophecy Database and Tools Suite, AGAVE
eGroups: microarray
Euchromatin Network
ExPASy Molecular Biology Server
FRONTIERS IN BIOSCIENCE; DATABASES; TRANSCRIPTION FACTORS
FRONTIERS IN BIOSCIENCE; PROTOCOLS
FRONTIERS IN BIOSCIENCE; DATABASES; VECTORS
Gene Expression databases list
Gene Identification and Structure databases list
Genetic Codes
Genetics & Nucleic Acids Index
George Grill's Links to DNA Sequencing Related Sites
Institute for Molecular Oncology's web resources
Intermolecular Interactions Databases (NAR)
Intermolecular Interactions databases list
LabVelocity - resource for biotechnology and life science
Large-Scale Gene Expression and Microarray Links and Resources
Links2Go: Molecular Biological Databases
Links2Go: Molecular Biological Software
Links2Go: Molecular Biology
Links2Go: Mutation Databases
Major Sequence Repositories
MBS
MBS - Molecular Biology Shortcuts
Methods and Protocols
Microbiological Links
MolBio.org
Molecular Biology Databases on the Internet
Molecular Biology Desk
Molecular Biology Protocols Resources page
Molecular biology protocols.
Molecular Biology resources (links2go)
Molecular Biology Software
Molecular Biology>Basic Techniques>Autoradiography
Molecular Biology>Basic Techniques>Centrifugation
Molecular Biology>Basic Techniques>Media and Reagents
Molecular Biology>Basic Techniques>Molecular Marker
Molecular Biology>Basic Techniques>Others
Molecular Biology>Basic Techniques>Spectrophotometry
Molecular Biology>Basic Techniques>Sterile Technique
Molecular Biology>Carbohydrate>Carbohydrate Analysis
Molecular Biology>Cosmid
Molecular Biology>DNA-Protein Interaction>Band Shift
Molecular Biology>DNA-Protein Interaction>Footprinting
Molecular Biology>DNA-Protein Interaction>Methylation Interference
Molecular Biology>DNA-Protein Interaction>Protein Preparation
Molecular Biology>DNA-Protein Interaction>Purification of DNA Binding Protein
Molecular Biology>DNA>DNA Cloning
Molecular Biology>DNA>DNA Electrophoresis
Molecular Biology>DNA>DNA Extraction
Molecular Biology>DNA>DNA Labeling
Molecular Biology>DNA>DNA Library
Molecular Biology>DNA>DNA Microarray Techniques
Molecular Biology>DNA>DNA Sequencing
Molecular Biology>DNA>Mutagenesis
Molecular Biology>DNA>Oligos
Molecular Biology>DNA>Southern Blotting
Molecular Biology>DNA>TA Cloning
Molecular Biology>DNA>Transfection
Molecular Biology>DNA>Transformation
Molecular Biology>Genetics>Cancer Genetics
Molecular Biology>Genetics>DNA Fingerprinting
Molecular Biology>Genetics>Gene Discovery
Molecular Biology>Genetics>Gene Therapy
Molecular Biology>Genetics>Genetic Footprinting
Molecular Biology>Genetics>Genetic Mapping
Molecular Biology>Genetics>Genotyping
Molecular Biology>PCR>In Situ PCR and RT-PCR
Molecular Biology>PCR>Long Distance PCR
Molecular Biology>PCR>Other PCR Methods
Molecular Biology>PCR>PCR Additives
Molecular Biology>PCR>PCR Downstream Application
Molecular Biology>PCR>PCR Primer
Molecular Biology>PCR>RT-PCR
Molecular Biology>PCR>Standard PCR
Molecular Biology>Phage>Lambda
Molecular Biology>Phage>M13
Molecular Biology>Phage>Phage Culture
Molecular Biology>Phage>Phagemid
Molecular Biology>Plasmid
Molecular Biology>Plasmid>Maxiprep
Molecular Biology>Plasmid>Midiprep
Molecular Biology>Plasmid>Miniprep
Molecular Biology>Plasmid>Transformation
Molecular Biology>Protein>Analysis of Protein Interaction
Molecular Biology>Protein>Analysis of Protein Phosphorylation
Molecular Biology>Protein>Nuclear Extraction
Molecular Biology>Protein>Peptides
Molecular Biology>Protein>Protein Detection
Molecular Biology>Protein>Protein Electrophoresis
Molecular Biology>Protein>Protein Expression
Molecular Biology>Protein>Protein Extraction and Purification
Molecular Biology>Protein>Protein Labeling
Molecular Biology>Protein>Protein Quantitation
Molecular Biology>Protein>Protein Translation
Molecular Biology>Protein>Western Blotting
Molecular Biology>RNA>cDNA
Molecular Biology>RNA>Differential Display
Molecular Biology>RNA>Dot And Slot Blot
Molecular Biology>RNA>Gel Shifting
Molecular Biology>RNA>In Situ Transcription and antisense Amplification
Molecular Biology>RNA>In Vitro Transcription
Molecular Biology>RNA>Northern Blotting
Molecular Biology>RNA>Primer Extension
Molecular Biology>RNA>RACE
Molecular Biology>RNA>RNA Extraction
Molecular Biology>RNA>RNA Splicing
Molecular Nanotechnology
Mutation Databases list
National Biomedical Computation Resource
Neal's DNA Mutation Site
Neuroblastoma
NHGRI MicroArray Project (µAP)
NUCLEIC ACIDS tools list at Gutell Lab
PCR Links
Peptide Nucleic Acid (PNA)
Practical Molecular Biology
PRIMER and PCR tools list
Protocol Quick Access Table
Resources for microarray analysis
Reviews - Primer Design
RNA Resources on the Web
RNA Sequences database list
RNA Sequences database list
ScientistCentral: General Genomics, Genetics & DNA Tools
ScientistCentral: General Technical Resources (DNA, protein tools)
Signal Sites Recognition
Sites for the Molecular Biology -- Sites for the Molecular Biology (A. Isoai,
Japan)
SNP (Single Nucleotide Polymorphisms) links
Software for Molecular Biology
Sources for RNA Folding Software
Temos: Genetics and Biotechnology
Textbooks, software, and general references on molecular biology
The Microbial Underground!
The Polymerase Chain Reaction (PCR) Jump Station
The University of Cincinnati DNA Core Facility
The Virtual Laboratory: Molecular Genetics Lab
Tools for the Molecular Biology - Quick Access Table
Tutorial on Useful Molecular Biology Web Sites
Xenopus Microarray Project Web
bibliography
A Bibliography on Long-range correlation in DNA sequences
Abbreviations and Symbols for Nucleic Acids, Polynucleotides and their
Constituents
ABRF DNA Sequence Research Group
Alternative polyadenylation in EST
Apoptosis Web site
BNI: Biomolecular Networks Initiative
cDNA/AFLP
Computers & Chemistry journals
Cytometry
DNA-binding sites of Tc1, mariner and pogo transposases
Documentation on the EMBL Nucleotide Sequence Database
Euchromatin Network
Genetic Codes
Genetic Engineering News
Glossary of Biochemistry and Molecular Biology
Inteins - protein introns
IUMB: INTERNATIONAL UNION OF BIOCHEMISTRY AND MOLECULAR BIOLOGY
Journal of Biomolecular Techniques
MBC
Microarray Data Analysis papers.
microarrays books selection
Microbiological Links
MINO ACID PROPERTIES AND CHARACTERISTICS
MIT: Molecular Pattern Recognition
NHGRI MicroArray Project (µAP)
Nomenclature for Incompletely Specified Bases in Nucleic Acid Sequences
Nucleic Acids Research
Nucleic Acids Techniques
Protein-DNA Cooperativity. Quantitative Analysis of DNAse1 Footprint Data.
REFERENCES BOOKS on DNA
Restriction Enzymes Web Page
Selected Scientific Journals
SpliceProximalCheck
Table of Standard Genetic Code
The Genetic Codes
online analysis tools
5S ribosomal RNA Homepage
ABI-to-Excel Converter
Abie: Antibody design online
ACTIVITY: Functional DNA/RNA site sequences
AliBaba2
ArrayExpress Database
ATGpr: A program for identifying the initiation codons in cDNA sequences.
Bench Mate : RE Finder, Tm Calc.
bend.it
BioBencHelper
bioinformatik.de / PCR / Primer Design
BioNetbook: primer software
Biopolymer Calculator
Carte de restriction d'une séquence
CIRDNA : Draws circular maps of DNA constructs (EMBOSS)
CloneIt
CODEHOP
Codon usage table analysis
codontree
CodonW
Computational Molecular biology: Sequence Analysis Tools (NIH)
CPGPLOT: Plot CpG rich areas (EMBOSS)
CRAFT
CSM Tsukuba Server (Cellular Slime Molds cDNA)
DAN: Calculates DNA RNA/DNA melting temperature (EMBOSS)
Distance-correlated transcription factor binding sites with FastM and
ModelInspector
DNA & Protein Analysis Toolkit
DNA folding server
DNA Mutation Checker
DNA Mutation Checker 2
DNA Primer Melt Calculator
DNA reader
DoPrimer: primer design
Dot Plot: Display possible intermolecular secondary structure elements between
two single stranded RNA or DNA molecules.
Electronic PCR
EMBOSS: CpG islands (Pasteur)
ExPASy Molecular Biology Server
Find restriction sites
FunSite
FunSiteP
FUZZNUC: Nucleic acid pattern search (EMBOSS)
GEECEE : Calculates the fractional GC content of nucleic acid sequences (EMBOSS)
Gel Electrophoresis Simulator
Gene Discovery Page (US mirror)
Gene Finder -- Nucleotids
Gene Prediction, Best ORF and Functional Site Identicication
GeneFisher
GeneNest Index
GenScript siRNA Target Finder
GEO (NCBI gene expression omnibus)
GRESA - COMPEL database
Hyther: Prediction of Nucleic Acid Hybridization Thermodynamics
Keynet
Keynet: MITOCHONDRIAL GENE Tree Browsing
LABORATOIRE de BIOCHIMIE et BIOLOGIE MOLECULAIRE des INSECTES, INSTITUT PASTEUR,
PARIS
LINDNA : Draws linear maps of DNA constructs (EMBOSS)
Links2Go: Molecular Biological Software
MatInspector
MatInspector
MatInspector
MBS Enzfinder
MBS Oligo Calculator
MEDUSA - PCR Primer Selection
MELTING: enthalpie, entropy and melting temperature (N. Le Novere)
MINT: a database designed to store functional interactions between biological
molecules (proteins, RNA, DNA).
MitoNuc: a database of nuclear genes coding for mitochondrial proteins.
model.it : building three dimensional DNA models from sequence data
Molecular Biology>RNA>RNA Extraction
Molecular weight calculator
MWST (maximum weight spanning tree)
National Biomedical Computation Resource
NCBI Electronic PCR
NDB Atlas of Nucleic Acid containing Structure
NDB:
NEBcutter: a program to cut your DNA with any of the known restriction enzymes.
NetPrimer
NNPP: Promoter Prediction by Neural Network
NUCLEIC ACIDS tools list at Gutell Lab
ODNbase: the antisense Oligo Database
Oligo Calculator
Oligo calculator
OligoPicker Homepage
Oligos-U-Like (Primer3)
Oligowiz: Design of oligonucleotides for microarrays and perspectives for design
of multi-transcriptome arrays
Online oligo design
PatSearch
PCR Box Titration Calculator
PCR primer selection
plot.it
Poland: Prediction of melting transitions of dsRNA, DNA or RNA/DNA hybrids
polyadq
POMPOUS: Pre-computed marker catalog and server
Practical Molecular Biology.
Predicting activities of functional sites in DNA/RNA
PRIM A virtual laboratory for the study of primers.
PRIMA
PrimeGen (Design Primers from Multiple Alignments)
PRIMEGENS (PRIMEr Design Using GEN Specific Fragments)
Primegens Web Server
PRIMER and PCR tools list
Primer design (java applet)
Primer selection
Primer Selection (image)
Primer3
Primer3: WWW primer tool
PrimerChecker
Primerfinder
Primers! Lite
Primo MSP: Methylation Specific PCR Primer Design
Primo Multiplex: Multiplex PCR Primer Design
Primo: PCR Primer Design
PRIMO: Prediction of forward and reverse oligonucleotide Primers
ProbeWiz Server
Programs to search for binding sites and more
Promoter Prediction Server
Promoter Scan
Promoter Scan II
Putative Alternative Splicing Database (PALS db)
RCSA, G+C content and Nc values
READ: RIKEN Expression Array Database
ReBASE Information Tool
RecGroup
Recipe Calculator
REMAP : Display a sequence with restriction cut sites, translation etc..
(EMBOSS)
Reports CpG rich regions (EMBOSS)
Restenzyme
RESTRICT
RESTRICT: Finds restriction enzyme cleavage sites (EMBOSS)
Restriction Enzyme Analysis
Restriction Enzyme Analysis
Restriction Site Analysis
RestrictionMapper: Maps sites for restriction enzymes (restriction endonucleases)
in DNA sequences.
RGSiteScan
RGSiteScan
Richesse en AT ou GC (graphe)
RNABase.org: The RNA Structure Database
S/MARt DB - The S/MAR transaction DataBase
Savvy: Scalable Vector Graphics, Plasmid Map
scans a DNA sequence for potential silent mutations to create = new restriction
sites
SDS-page
Signal Sites Recognition
SiteScan:
Small RNA database
SMD: Stanford Microarray Database
SNPSequer:Batch query of SNPs -- obtain flanking sequences of sufficient length
for SNP genotyping primer design
Software from the Computational Molecular Biology Group (FootPrinter, YMF,
COSMO, Projection, Dapple)
SOURCE: scientific resource that pools publicly available data.
Splice sites, Protein coding exons and Gene model construction, Promoter and
polyA regions recognition
SpliceProximalCheck